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Subscribe to this list via RSS Blog posts tagged in Amyloid protein

 

A lot of the interest in Network Patent Analysis (NPA) comes from clients who are interested in so called 'white space' between patent clusters.  At Ambercite we think that both clusters and white space are important:

  • clusters show areas of technology investment, which is an important signal,
  • white space shows the opportunities for new technologies.

 

But we also know that the white space is often not completely empty, with what we have defined as 'broker patents' acting to bridge different technologies. For example, the figure below which shows the grey broker patents sitting in the middle of three different clusters.

White_space_picture

 

But what if there no broker patents? The figure below is a summary of the patent landscape from our recently published paper on Alzheimers patents - the full NPA landscape map is found here, and is well worth a look.

alzheimerss_schematic

 

The structure of this patent landscape plot is very unusual in NPA terms. The patents form into very tight clusters, which in turn fall into two groupings of clusters. This structure can be contrasted to say a more typical NPA map, where there is a central cluster and then a series of clusters around this with significant interactions, such as the smartphone NPA map shown here.

Investigation of the subject matter of the clusters and groupings in the Alzheimer's map suggest that, in very simple terms:

  • The top grouping ('Amyloid Grouping') are focused on patents claiming drugs trying to prevent the buildup of beta amyloid, a protein which is known to accumulate in plaques found in the brains of Alzheimer's affected patients.
  • The bottom grouping ('Tau Grouping') is focused on patents claiming drugs focusing on other aspects of brain chemistry, including the important Tau protein, which is present in nerve cells.

 

The connections between these two groupings were very sparse, comprising just three main patents, as shown in the figure below:

Alzheimers_broker_patents

 

Within the Alzheimer's paper, the highest ranked patent of all in the was US7189819. This patent is thought to protect the drug bapineuzumab, which is undergoing stage III trials at the moment, and which is co-owned by Elan Pharmaceuticals, Johnson & Johnson, and Pfizer. This patent sits right at the centre of the largest cluster 'Peptides and antibodies targeting β-amyloid' in the top grouping of clusters. 

An important paper has just been published on the effect of bapineuzumab on Alzheimer's sufferers, and perhaps surprisingly, it was found that in the trial to have no significant effect on the amount of beta amyloid in the brain. But it was found to reduce the amount of so called 'phosphorylated tau' (p-Tau) in the brain, and this could be an important outcome as p-Tau can be broadly regarded as 'damaged tau', and so may contribute to reduced brain function and other Alzheimer's symptoms. Hence a reduction in p-Tau is possibly a good thing.

And this may not be a totally surprisingly result, as besides building up in Alzheimer patient's brains as plaques, beta amyloid is thought to cause tau to change from normal tau to p-Tau.

But bapineuzumab was supposed to relate to patents found in the Amyloid Grouping, not the Tau Grouping. So did NPA get it wrong?

Well, no. NPA is merely a way of looking at the patent landscape, a lens you could call it. What NPA instead told us is:

  1. all of the companies that have filed patent for bapineuzumab or similar drugs appeared to focused on managing beta amyloid, and
  2. that there was unusual (compared to other technical areas we have looked it) low levels of linkages between the different clusters, and in particular the different groupings. This suggests that there might be opportunities to develop treatments that cut across the different clusters, opportunities that have not been heavily exploited to date. These treatments might be variations of pharmaceuticals targetting different mechanisms, or combinations of drugs to target more than one mechanism at once.

 

Hence the bapineuzumab p-Tau result has merely confirmed the value of white space analysis, particular when the white space is clearer than normal. Hence the take home lesson is that such clear white space in an NPA landscape should raise the question - what opportunities for new technologies that cross over this white space are going begging?

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The recently published NPA white paper on Alzheimer's patents analysed the 48,000 Alzheimer's patents in a variety of ways. But which patent applicants had the strongest patent portfolios?

Traditionally such analysis has been done by counting the patents filed by different applicants. However it is self-evident that all patents are not equal in value or importance, and NPA uses the wealth of information contained in the citation links between patents to rank the expected relative value of patents. In this particular study we identified the leading 2,153 patents based on their strength of citation connections, and ranked all of these patents in order. A number of these patents were found to have equal rankings (for example, there were two 5th ranked patents, two 16th ranked patents, etc) meaning that there were 915 unique patent rankings. The highest ranked patent was given 915 'patent points' in our analysis, the second ranked patent 914 points, and so on until the last ranked of the 2153 leading patents was assigned 1 point. By adding up the patent points for given patent applicants, it is possible to rank patent portfolios in a way that takes into account the relative quality of the patents in these portfolios.

We also aimed to agglomerate the patent portfolios of subsidiaries of larger patent owners into the parent company. While is was impractical to determine the ultimate owner of all 2153 patents, we did identify the current ultimate owner of all of the largest portfolios. For example, Wyeth patents are now all controlled by Pfizer, and there are many other examples of similar consolidation. Similarily we combined all patents owned by agencies of the US Government under the one owner "US Goverment Agencies".

But enough of the background - what did we find? Details from the top 20 portfolios are shown in the table below.This shows the 20 patent applicants with the strongest portfolios, their relative strength in relation the leading applicant, the number of patents in the leading 2153 patents, and some details of their top ranked patent in this study. There are also some details of the patent cluster (grouping of similar patents as determined by the NPA algorithms) where the leading patent is found, along with the most important cluster for each applicant (further details of these clusters are found in the white paper).

 

Row Labels Relative NPA patent portfolio strength Count of patent Top ranked patent (filing year) Patent title Cluster title where leading patent is found NPA ranking of patent within cluster Most dominant cluster for applicant
Pfizer (US) 100% 216 US7927594, (2005) Antibodies directed against amyloid-beta peptide Peptides and antibodies targeting β-amyloid 27 Fibrinolysis inhibition targeting plasminogen and serine
GlaxoSmithKline (UK) 63% 166 US5985242, (1997) Modulators of beta-amyloid peptide aggregation comprising D-amino acids Peptides and antibodies targeting β-amyloid 42 GSK-3 - Tau fibrillation inhibition/ Hormonal and kinase
Elan (Ireland) 48% 82 US6114133, (1994) Methods for aiding in the diagnosis of Alzheimer's disease by measuring amyloid-B peptide (x>=41) Peptides and antibodies targeting β-amyloid 26 Peptides and antibodies targeting β-amyloid
Merck (US) 46% 144 US7192944, (2004) Substituted azetidinone compounds, processes for preparing the same, formulations and uses thereof Seratonin receptor agonists 1 Secretase inhibitors (β and γ)
Vertex Pharmaceuticals (US) 38% 107 US7531536, (2003) Pyrazole compounds useful as protein kinase inhibitors GSK-3 - Tau fibrillation inhibition/ Hormonal and kinase 1 GSK-3 - Tau fibrillation inhibition/ Hormonal and kinase
Elan/Pfizer (IR/US) 37% 66 US6420534, (2001) Alzheimer's disease secretase, APP substrates therefor, and uses thereof Peptides and antibodies targeting β-amyloid 30 Peptides and antibodies targeting β-amyloid

ACADIA

Pharmaceuticals (US)

33% 39 US7402590, (2006) Spiroazacyclic compounds as monoamine receptor modulators Seratonin receptor agonists 1 Seratonin receptor agonists

Elan/Johnson &

Johnson (Ireland/US)

33% 33 US6743427, (2000) Prevention and treatment of amyloidogenic disease Peptides and antibodies targeting β-amyloid 2 Peptides and antibodies targeting β-amyloid
Elan/Lilly (IR/US) 19% 28 US5593846, (1995) Methods for the detection of soluble B-amyloid peptide Peptides and antibodies targeting β-amyloid 13 Peptides and antibodies targeting β-amyloid
AstraZeneca (UK) 17% 69 WO2007058602, (2006) Novel 2-amino-imidazole-4-one compounds and their use in the manufacture of a medicament to be used in the treatment of cognitive impairment, alzheimer's disease, neurodegeneration and dementia Secretase inhibitors (β and γ) 12 Secretase inhibitors (β and γ)
US Government agencies 17% 31 US6313268, (1999) Secretases related to Alzheimer's dementia Peptides and antibodies targeting β-amyloid 49 Peptides and antibodies targeting β-amyloid
Eisai (JP) 16% 44 US7667041, (2005) Cinnamide compound Sulfonamide derivatives targeting β-amyloid 2 Sulfonamide derivatives targeting β-amyloid
Elan/Johnson & Johnson/Pfizer 13% 14 US7189819, (2001) Humanized antibodies that recognize beta amyloid peptide Peptides and antibodies targeting β-amyloid 1 Peptides and antibodies targeting β-amyloid
Boehringer Ingelheim (Germany) 12% 43 WO2001036403, (2000) Urea derivatives as anti-inflammatory agents GSK-3 - Tau fibrillation inhibition/ Hormonal and kinase 35 Metalloproteinase inhibitors
Merck/Ligand (US/US) 12% 24 US7700603, (2005) Heterocyclic aspartyl protease inhibitors Secretase inhibitors (β and γ) 1 IL-8 receptor agonists
Bellus Health (CA) 11% 21 WO2001039796, (2000) Vaccine for the prevention and treatment of alzheimer's and amyloid related diseases Peptides and antibodies targeting β-amyloid 48 Peptides and antibodies targeting β-amyloid
Johnson & Johnson (US) 9% 31 US5387742, (1991) Transgenic mice displaying the amyloid-forming pathology of alzheimer's disease Peptides and antibodies targeting β-amyloid 7 Peptides and antibodies targeting β-amyloid
Bayer (Germany) 9% 23 US5786180, (1995) Monoclonal antibody 369.2B specific for beta  A4 peptide Peptides and antibodies targeting β-amyloid 132 Peptides and antibodies targeting β-amyloid
Bristol-Myers Squibb (US) 8% 39 US6670357, (2001) Methods of treating p38 kinase-associated conditions and pyrrolotriazine compounds useful as kinase inhibitors GSK-3 - Tau fibrillation inhibition/ Hormonal and kinase 20 Broker patents

Teva Pharmaceutical (Israel)

8% 29 US5877218, (1995) Compositions containing and methods of using 1-aminoindan and derivatives thereof and process for preparing optically active 1-aminoindan derivatives Anti Convulsants  - non-reversible MAO-B inhibitor 1 Anti Convulsants  - non-reversible MAO-B inhibitor

 


Many of the leading applicants, such as Pfizer, GlaxoSmithKline, Merck, Astrazeneca, Johnson and Johnson, Bayer and Bristol Myers Squibb are well known pharmaceutical companies and their placement in this table may not surprise observers. The position of Pfizer and Johnson & Johnson is further enhanced by their share of the portfolios jointly owned along with Elan.  

There are also some smaller and more specialised companies with strong portfolios. These smaller companies are led by Elan, which describes itself as 'a neuroscience-focused biotechnology company headquartered in Dublin, Ireland', and which owns a strong portfolio of Alzheimer's patent both by itself and together with larger pharmaceutical companies. Other smaller companies include Vertex Pharmaceuticals and Acadia Pharmaceuticals, both of the US, Boehringer Ingelheim of Germany, Bellus Health of Canada, and Teva Pharmaceuticals of Israel.

The Alzheimer's NPA report also noted that the clusters formed into two 'Groupings' of clusters (best seen in the Alzheimer's NPA landscape plots). One grouping of clusters were related to the Amyloid protein, and the second grouping to the Tau protein. In the figure below, the leading ten applicants in the above list are compared in terms of where their patents fall within these two Groupings.


NPA_leading_applicants

This image shows that the large pharmaceutical companies Pfizer, GlaxoSmithKline and Merck (and to a lesser extent AstraZeneca) all have patent portfolios divided between the two Groupings of clusters. In contrast, the other applicants in this top ten list are focussed in just one of these groupings. Elan (and its partners) and Acadia Pharmaceuticals are both focussed on the Amyloid Grouping, while Vertex Pharmaceuticals is focused on the Tau Grouping.

But will these patent portfolio's translate to commercial success? One of the pleasing results from the Alzheimer's NPA white paper was the relatively young (compared other NPA studies we have done) age profile of the leading patents, which suggests a lot of recent research and related patent filing activity. The flip side of this recent activity is that even the more promising of these patented drugs will still be going through drug trials, and so we can only wait to find out which of these patented drugs are commercially successful.


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